Hematopoietic Cell Transplant (HCT)
- Shamila Habibi

- Apr 18, 2025
- 6 min read
Updated: Nov 22, 2025
Types of transplant:
Allogeneic HCT:
Infusion of hematopoietic cells (CD34⁺) from a HLA-compatible donor after cytotoxic conditioning to eradicate disease and enable engraftment.
Used in order to deliver high doses of chemotherapy + “graft vs. tumor” (GVT) effect
GVT affect: immune-mediated cytotoxic effect exerted by donor-derived immune cells against the recipient’s neoplastic cells following allo-HCT
~30-50% of allo-HCT develops with acute GVHD (aGVHD)
Most commonly used for high-risk or relapsed hematologic malignancies (high-risk AML, high-risk MDS, ALL) and non-malignant uses include severe aplastic anemia, Hemoglobinopathies (sickle cell disease, β-thalassemia major), congenital immunodeficiencies, etc.
Leads to 5-year disease free survival rates of 30-55% when done during 1st remission
Autologous HCT:
Hematopoietic cells collected from the patient prior to high-dose chemo are infused back into the patient after administration of the preparative regimen, with the primary goal of "rescuing" hematopoietic function that is damaged by the chemotherapy
GVHD is rare
Most commonly used for chemosensitive diseases such as multiple myeloma, followed by NHL and HL, and some solid tumors (neuroblastoma and testicular germ cell tumors)
Leads to 5-year disease free survival rates of 45-65% when done during 1st remission
Auto-HCT is associated with less morbidity and mortality but greater risk of disease relapse compared to allo-HCT
Pre-Transplant Evaluation:
Confirmation of diagnosis and disease status
Cytogenetics/molecular testing, MRD, etc.
ABO/Rh typing
ABO incompatibility is not a contraindication to transplantation
Performance status (ECOG/KPS)
Comorbidity index:
Hematopoietic Cell Transplantation- Comorbidity Index (HCT-CI)
Organ function (pulmonary, cardiac, renal, hepatic)
Infectious disease screening (CMV, HBV, HCV, HIV)
Psychosocial evaluation/ support systems
Human leukocyte antigens (HLA) typing for allogeneic candidates
Donor Selection (for allo-HCT):
The preferred donor is an HLA-matched sibling. If unavailable, matched unrelated donors, haploidentical family members, or umbilical cord blood may be considered.
Donor age and health are important predictors of outcome.
HLA matching:
Critical to minimize graft failure and GVHD.
Major Histocompatibility Complex (MHC) Locus is a region on the short arm of chromosome 6 that contains genes encoding cell surface glycoproteins including the HLA class I (HLA-A, HLA-B, HLA-C) and HLA class II (HLA-DR, HLA-DQ, HLA-DP).
Related donor:
HLA genes are inherited as haplotypes (one from each parent). Therefore, there is a 25% chance that full sibling would be HLA matched.
HLA-matched sibling donors are preferred over HLA-matched unrelated donors because they share more non-HLA genetic background → fewer minor histocompatibility antigen differences → lower risks of GVHD and improved outcomes
Haploidentical means half-matched HLA genotype
Parent is 100% and sibling is 50% likely to be a haploidentical donor.
Unrelated donor:
~30-75% of patients find an optimal (8/8) HLA-matched unrelated donor
Highest rates: white non-Hispanic/European descent
Lowest rates: Black and minority populations
ABO Blood Groups:
Hematopoietic stem cells do not express ABO, therefore, ABO matching is not required for transplantation.
Residual donor RBCs or plasma antibodies can still lead to incompatibilities, resulting in hemolysis (immediate or delayed) or delayed RBC recovery (pure red cell aplasia).
Sources of graft/stem cells:
Graft source is chosen based on disease, patient comorbidities, and urgency.
Peripheral Blood:
Requires plerixafor (CXCR4 antagonist) ± GCSF/GMCSF (mobilize CD34+ cells) followed by leukapheresis
Preferred source of graft (ease of collection, reduced cost, better safety, faster engraftment)
Similar rate of aGVHD, higher rate of cGVHD
Hypocalcemia and cramping may occur due to citrate toxicity
Supplemental calcium is typically given during leukapheresis
Bone Marrow:
Requires multiple BM aspirations from bilateral posterior iliac crests
Generally quick turnaround time to transplant (from donor to recipient)
Cryopreservation is possible, but not preferred
Umbilical Cord Blood (UCB):
Has less mature T cells (HLA matching is less stringent) → less risk of GVHD
lower hematopoietic cells (CD34⁺) → Higher rate of graft rejection/failure
Engraftment time is longer
Use of two cords (to achieve adequate number of CD34+ cells) reduces risk of failure/rejection and shortens engraftment time
Conditioning Regimens:
Conditioning intensity is tailored to disease type, patient age, comorbidities, and remission status.
Eradicate any remaining disease, create space for engraftment, and immunosuppress the host to prevent graft rejection (for allo-HCT).
Patients with severe combined immunodeficiency (SCID) often require no preparative regimen before HCT because they lack a functional immune system
Categories:
Myeloablative regimens:
Cause irreversible marrow aplasia and requires replacement stem cells
Preferred for younger, fit patients with aggressive disease.
Common regimens:
Cyclophosphamide + Total body irradiation (TBI)
Cyclophosphamide + Busulfan
Fludarabine + Busulfan
Non-myeloablative regimens/ low-intensity:
Less myelosuppression
For older or frail patients, or those with indolent disease.
Provide a graft vs. tumor (GVT) effect, with similar anti-cancer outcomes and less toxicity compared to myeloablative regimens
Lower non-relapse mortality but higher relapse rates compared to myeloablative regimen
Transplant Procedure:
After conditioning, donor hematopoietic cells (from peripheral blood/BM/UCB) are infused.
Engraftment is monitored by blood counts and chimerism analysis (for allo-HCT).
Chimerism analysis is a test used after HCT to determine what proportion of a patient’s blood or BM cells come from the donor vs the recipient.
Post-Transplant Care:
Intensive supportive care is required until engraftment.
Monitoring for GVHD (in allo-HCT), infections and organ toxicities.
Long-term follow-up to address late adverse effects, cGVHD and disease relapse.
Complications:
GVHD:
Mediated by B cells (mostly in cGVHD) and T cells reacting against host cells
Major cause of non-relapse mortality.
Acute GVHD:
Usually develops within the first 100 days after HCT (mostly in 2-6 weeks)
Commonly affects the skin (maculopapular rash), GI tract (N/V, anorexia, diarrhea, ileus), and liver (jaundice, hyperbilirubinemia)
May be diagnosed with biopsy, not absolutely required if clinical findings are classic
Treatment:
Prednisone 1-2 mg/kg/day ± topical steroids for skin or GI disease
Steroid-refractory aGVHD:
Ruxolitinib (JAK-2 inhibitor): The only FDA-approved category 1 agent
Antithymocyte globulin (ATG) is listed as an alternative option
Chronic GVHD:
Presents more indolently
Clinical features that mimic autoimmune/connective tissue diseases:
Sclerotic skin changes, lichen planus-like oral lesions, dry eyes, bronchiolitis obliterans, esophageal involvement
Treatment:
Prednisone ± calcineurin inhibitor ± topical/inhaled steroids
May need to re-escalate immunosuppression if had been tapering
Steroid-refractory cGVHD:
Ruxolitinib (category 1)
Ibrutinib, Belumosidil, Axatilimab (FDA-approved)
May need to re-escalate immunosuppression if had been tapering
Prophylaxis:
Immunosuppression with calcineurin inhibitor (cyclosporine, tacrolimus) + antimetabolite (MTX, Mycophenolate Mofetil)
± post transplant cyclophosphamide (PTCy), ATG, abatacept
Autoimmune:
Common autoimmune complications:
Autoimmune cytopenias (Hemolytic anemia, ITP, neutropenia)
Thyroid disorders
Neuromuscular diseases (Myasthenia gravis)
Rheumatologic diseases (RA, vasculitis, scleroderma-like syndromes)
Skin manifestations (Vitiligo, psoriasis)
Treatment: Immunosuppression
Infection:
Significant cause of morbidity and mortality due to immunosuppression from transplant or GVHD ppx/treatment
Vaccination:
Normal Ab titers from previous vaccinations usually downtrends post transplant, will need revaccination.
Live vaccines are usually given after 2 years to avoid complications.
Bacterial:
Before engraftment:
Fluoroquinolone is often given if prolonged (> 7–10 days) or high‐risk neutropenia is expected
After engraftment:
Consider Bactrim (+ PJP ppx) and penicillin if at risk for infection
Fungal:
Antifungal ppx is standard, typically with fluconazole
Typically continued until 75 days post transplant
Consider mold coverage (voriconazole/posaconazole) for higher risk patients (GVHD, prolonged neutropenia)
Viral:
HSV:
Prophylaxis: Acyclovir, valacyclovir, Famciclovir
Begin with conditioning and continue during neutropenia or until mucositis resolves (typically at least 30 days post-HCT)
Consider extended prophylaxis for those with ongoing immunosuppression or cGVHD.
Treatment: Acyclovir, valacyclovir, Famciclovir, Foscarnet (for refractory/resistant infections)
VZV:
Consider VZV prophylaxis for at least 1 year after allo-HCT
If cGVHD or ongoing immunosuppression:
Zoster vaccine may be administered after the end of antiviral prophylaxis
12–18 months after allo-HCT
3–12 months after auto-HCT
CMV:
Mostly involves GI tract or lungs
Prophylaxis with Letermovir for up to day 100-200 post-HCT in CMV seropositive allo-HCT recipients
Not associated with bone marrow suppression (unlike ganciclovir or valganciclovir)
Treatment:
Ganciclovir
Maribavir: for refractory/resistant infections
Foscarnet: Nephrotoxic and requires monitoring of electrolytes
Iatrogenic (due to conditioning regimen):
Hemorrhagic cystitis ← Cyclophosphamide
Parotiditis ← Total body irradiation
Oral mucositis
Usually requires analgesia
Veno-Occlusive Disease/ Sinusoidal Obstruction Syndrome (VOD/SOS):
Life-threatening complication of HCT/certain chemo regimens
Toxic injury to the liver sinusoidal endothelial cells → necrosis and detachment → obstruction of small hepatic venules and sinusoids → post-sinusoidal portal HTN and impaired hepatic blood flow
Associated with Antibody Drug Conjugates (ADC) with calicheamicin
Inotuzumab ozogamicin
Gemtuzumab ozogamicin
Prophylaxis: Urosodiol
Recommended for all patients undergoing allo-HCT
Start before conditioning and continue for several months post-HCT.
Treatment:
Defibrotide: Only FDA-approved treatment for moderate-severe cases
Pulmonary complications:
Idiopathic pneumonia syndrome
Restrictive lung disease
Cryptogenic organizing pneumonia (COP)
Treated with steroids
Obstructive lung disease
Bronchiolitis obliterans
Treated with increased immunosuppression
Timeline of common complications:
Pre-engraftment (less than 30 days following HCT)
Neutropenia:
Leukocyte count starts to recover after 1-3 weeks post-HCT (usually later if UCB is used)
Administration of GCSF post-HCT reduces the duration of neutropenia and often shortens hospitalization but does not improve overall survival or infection-related mortality.
Platelet count usually lags behind by days to weeks.
Engraftment syndrome:
Occurs during neutrophil recovery after HCT due to release of pro-inflammatory cytokines (TNF, IL-1)
Common symptoms: Fever, skin rash, pulmonary infiltrates or edema, diarrhea, and hepatic or renal dysfunction
Must be differentiated from aGVHD and infectious complications
Steroids are mainstay of treatment
Mucositis
Infections:
HSV, gram- bacteria, gram+ bacteria from GI tract, Candida, Aspergillus
Post-engraftment (days 30 to 100)
aGVHD tends to occur here
Drugs used for GVHD ppx (cyclosporine/tacrolimus) can cause TMA
Characteristic infections: CMV, PJP, aspergillus
Late phase (>100 days)
cGVHD tends to occur here
Characteristic infections: VZV, aspergillus, PJP, other encapsulated bacteria
Graft Failure:
Usually due to host immune system rejecting donor marrow
The greater disparity in HLA antigens, the higher chance of rejection
Other potential causes:
Prior exposure to stem cell poisons
Marrow damage during processing/storage
Drug toxicity after HCT
Viral infections
Prognosis of hematologic malignancies that relapse after HCT is extremely poor
Post-HCT maintenance therapies:
Multiple myeloma: Lenalidomide
Hodgkin Lymphoma: Brentuximab Vedotin