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Hematopoietic Cell Transplant (HCT)

Updated: Nov 22, 2025

Types of transplant:

Allogeneic HCT:

  • Infusion of hematopoietic cells (CD34⁺) from a HLA-compatible donor after cytotoxic conditioning to eradicate disease and enable engraftment.

  • Used in order to deliver high doses of chemotherapy + “graft vs. tumor” (GVT) effect

    • GVT affect: immune-mediated cytotoxic effect exerted by donor-derived immune cells against the recipient’s neoplastic cells following allo-HCT

  • ~30-50% of allo-HCT develops with acute GVHD (aGVHD)

  • Most commonly used for high-risk or relapsed hematologic malignancies (high-risk AML, high-risk MDS, ALL) and non-malignant uses include severe aplastic anemia, Hemoglobinopathies (sickle cell disease, β-thalassemia major), congenital immunodeficiencies, etc.

  • Leads to 5-year disease free survival rates of 30-55% when done during 1st remission

Autologous HCT:

  • Hematopoietic cells collected from the patient prior to high-dose chemo are infused back into the patient after administration of the preparative regimen, with the primary goal of "rescuing" hematopoietic function that is damaged by the chemotherapy

  • GVHD is rare

  • Most commonly used for chemosensitive diseases such as multiple myeloma, followed by NHL and HL, and some solid tumors (neuroblastoma and testicular germ cell tumors)

  • Leads to 5-year disease free survival rates of 45-65% when done during 1st remission

  • Auto-HCT is associated with less morbidity and mortality but greater risk of disease relapse compared to allo-HCT


Pre-Transplant Evaluation:

  • Confirmation of diagnosis and disease status

    • Cytogenetics/molecular testing, MRD, etc.

  • ABO/Rh typing

    • ABO incompatibility is not a contraindication to transplantation

  • Performance status (ECOG/KPS)

  • Comorbidity index:

    • Hematopoietic Cell Transplantation- Comorbidity Index (HCT-CI)

  • Organ function (pulmonary, cardiac, renal, hepatic)

  • Infectious disease screening (CMV, HBV, HCV, HIV)

  • Psychosocial evaluation/ support systems

  • Human leukocyte antigens (HLA) typing for allogeneic candidates


Donor Selection (for allo-HCT):

  • The preferred donor is an HLA-matched sibling. If unavailable, matched unrelated donors, haploidentical family members, or umbilical cord blood may be considered.

  • Donor age and health are important predictors of outcome.

  • HLA matching:

    • Critical to minimize graft failure and GVHD.

    • Major Histocompatibility Complex (MHC) Locus is a region on the short arm of chromosome 6 that contains genes encoding cell surface glycoproteins including the HLA class I (HLA-A, HLA-B, HLA-C) and HLA class II (HLA-DR, HLA-DQ, HLA-DP).

    • Related donor:

      • HLA genes are inherited as haplotypes (one from each parent). Therefore, there is a 25% chance that full sibling would be HLA matched.

      • HLA-matched sibling donors are preferred over HLA-matched unrelated donors because they share more non-HLA genetic background → fewer minor histocompatibility antigen differences → lower risks of GVHD and improved outcomes

      • Haploidentical means half-matched HLA genotype

        • Parent is 100% and sibling is 50% likely to be a haploidentical donor.

    • Unrelated donor:

      • ~30-75% of patients find an optimal (8/8) HLA-matched unrelated donor

        • Highest rates: white non-Hispanic/European descent

        • Lowest rates: Black and minority populations

  • ABO Blood Groups:

    • Hematopoietic stem cells do not express ABO, therefore, ABO matching is not required for transplantation.

      • Residual donor RBCs or plasma antibodies can still lead to incompatibilities, resulting in hemolysis (immediate or delayed) or delayed RBC recovery (pure red cell aplasia).


Sources of graft/stem cells:

Graft source is chosen based on disease, patient comorbidities, and urgency.

  • Peripheral Blood:

    • Requires plerixafor (CXCR4 antagonist) ± GCSF/GMCSF (mobilize CD34+ cells) followed by leukapheresis

    • Preferred source of graft (ease of collection, reduced cost, better safety, faster engraftment)

      • Similar rate of aGVHD, higher rate of cGVHD

    • Hypocalcemia and cramping may occur due to citrate toxicity

      • Supplemental calcium is typically given during leukapheresis 

  • Bone Marrow:

    • Requires multiple BM aspirations from bilateral posterior iliac crests

    • Generally quick turnaround time to transplant (from donor to recipient)

      • Cryopreservation is possible, but not preferred

  • Umbilical Cord Blood (UCB):

    • Has less mature T cells (HLA matching is less stringent) → less risk of GVHD

    • lower hematopoietic cells (CD34⁺) → Higher rate of graft rejection/failure

      • Engraftment time is longer

      • Use of two cords (to achieve adequate number of CD34+ cells) reduces risk of failure/rejection and shortens engraftment time


Conditioning Regimens:

  • Conditioning intensity is tailored to disease type, patient age, comorbidities, and remission status.

  • Eradicate any remaining disease, create space for engraftment, and immunosuppress the host to prevent graft rejection (for allo-HCT).

  • Patients with severe combined immunodeficiency (SCID) often require no preparative regimen before HCT because they lack a functional immune system

  • Categories:

    • Myeloablative regimens:

      • Cause irreversible marrow aplasia and requires replacement stem cells

      • Preferred for younger, fit patients with aggressive disease.

      • Common regimens:

        • Cyclophosphamide + Total body irradiation (TBI)

        • Cyclophosphamide + Busulfan

        • Fludarabine + Busulfan

    • Non-myeloablative regimens/ low-intensity:

      • Less myelosuppression

      • For older or frail patients, or those with indolent disease.

      • Provide a graft vs. tumor (GVT) effect, with similar anti-cancer outcomes and less toxicity compared to myeloablative regimens

      • Lower non-relapse mortality but higher relapse rates compared to myeloablative regimen


Transplant Procedure:

  • After conditioning, donor hematopoietic cells (from peripheral blood/BM/UCB) are infused.

  • Engraftment is monitored by blood counts and chimerism analysis (for allo-HCT).

    • Chimerism analysis is a test used after HCT to determine what proportion of a patient’s blood or BM cells come from the donor vs the recipient.


Post-Transplant Care:

  • Intensive supportive care is required until engraftment.

  • Monitoring for GVHD (in allo-HCT), infections and organ toxicities.

  • Long-term follow-up to address late adverse effects, cGVHD and disease relapse.


Complications:

GVHD:

  • Mediated by B cells (mostly in cGVHD) and T cells reacting against host cells

  • Major cause of non-relapse mortality.

  • Acute GVHD:

    • Usually develops within the first 100 days after HCT (mostly in 2-6 weeks)

    • Commonly affects the skin (maculopapular rash), GI tract (N/V, anorexia, diarrhea, ileus), and liver (jaundice, hyperbilirubinemia)

      • May be diagnosed with biopsy, not absolutely required if clinical findings are classic

    • Treatment:

      • Prednisone 1-2 mg/kg/day ± topical steroids for skin or GI disease

      • Steroid-refractory aGVHD:

        • Ruxolitinib (JAK-2 inhibitor): The only FDA-approved category 1 agent

        • Antithymocyte globulin (ATG) is listed as an alternative option

  • Chronic GVHD:

    • Presents more indolently

    • Clinical features that mimic autoimmune/connective tissue diseases:

      • Sclerotic skin changes, lichen planus-like oral lesions, dry eyes, bronchiolitis obliterans, esophageal involvement

    • Treatment:

      • Prednisone ± calcineurin inhibitor ± topical/inhaled steroids

      • May need to re-escalate immunosuppression if had been tapering

      • Steroid-refractory cGVHD:

        • Ruxolitinib (category 1)

        • Ibrutinib, Belumosidil, Axatilimab (FDA-approved)

      • May need to re-escalate immunosuppression if had been tapering

  • Prophylaxis:

    • Immunosuppression with calcineurin inhibitor (cyclosporine, tacrolimus) + antimetabolite (MTX, Mycophenolate Mofetil)

      • ± post transplant cyclophosphamide (PTCy), ATG, abatacept

Autoimmune:

  • Common autoimmune complications:

    • Autoimmune cytopenias (Hemolytic anemia, ITP, neutropenia)

    • Thyroid disorders

    • Neuromuscular diseases (Myasthenia gravis)

    • Rheumatologic diseases (RA, vasculitis, scleroderma-like syndromes)

    • Skin manifestations (Vitiligo, psoriasis)

  • Treatment: Immunosuppression 

Infection:

  • Significant cause of morbidity and mortality due to immunosuppression from transplant or GVHD ppx/treatment

  • Vaccination:

    • Normal Ab titers from previous vaccinations usually downtrends post transplant, will need revaccination.

    • Live vaccines are usually given after 2 years to avoid complications.

  • Bacterial:

    • Before engraftment:

      • Fluoroquinolone is often given if prolonged (> 7–10 days) or high‐risk neutropenia is expected

    • After engraftment:

      • Consider Bactrim (+ PJP ppx) and penicillin if at risk for infection

  • Fungal:

    • Antifungal ppx is standard, typically with fluconazole

      • Typically continued until 75 days post transplant

    • Consider mold coverage (voriconazole/posaconazole) for higher risk patients (GVHD, prolonged neutropenia)

  • Viral:

    • HSV:

      • Prophylaxis: Acyclovir, valacyclovir, Famciclovir

        • Begin with conditioning and continue during neutropenia or until mucositis resolves (typically at least 30 days post-HCT)

        • Consider extended prophylaxis for those with ongoing immunosuppression or cGVHD.

      • Treatment: Acyclovir, valacyclovir, Famciclovir, Foscarnet (for refractory/resistant infections)

    • VZV:

      • Consider VZV prophylaxis for at least 1 year after allo-HCT

      • If cGVHD or ongoing immunosuppression:

        • Zoster vaccine may be administered after the end of antiviral prophylaxis

          • 12–18 months after allo-HCT

          • 3–12 months after auto-HCT

    • CMV:

      • Mostly involves GI tract or lungs

      • Prophylaxis with Letermovir for up to day 100-200 post-HCT in CMV seropositive allo-HCT recipients

        • Not associated with bone marrow suppression (unlike ganciclovir or valganciclovir)

      • Treatment:

        • Ganciclovir

        • Maribavir: for refractory/resistant infections

        • Foscarnet: Nephrotoxic and requires monitoring of electrolytes

  • Iatrogenic (due to conditioning regimen):

    • Hemorrhagic cystitis ← Cyclophosphamide

    • Parotiditis ← Total body irradiation

    • Oral mucositis

      • Usually requires analgesia

    • Veno-Occlusive Disease/ Sinusoidal Obstruction Syndrome (VOD/SOS):

      • Life-threatening complication of HCT/certain chemo regimens

      • Toxic injury to the liver sinusoidal endothelial cells  necrosis and detachment  obstruction of small hepatic venules and sinusoids post-sinusoidal portal HTN and impaired hepatic blood flow

      • Associated with Antibody Drug Conjugates (ADC) with calicheamicin

        • Inotuzumab ozogamicin

        • Gemtuzumab ozogamicin

      • Prophylaxis: Urosodiol

        • Recommended for all patients undergoing allo-HCT

        • Start before conditioning and continue for several months post-HCT.

      • Treatment:

        • Defibrotide: Only FDA-approved treatment for moderate-severe cases

  • Pulmonary complications:

    • Idiopathic pneumonia syndrome

    • Restrictive lung disease

      • Cryptogenic organizing pneumonia (COP)

        • Treated with steroids

    • Obstructive lung disease

      • Bronchiolitis obliterans

        • Treated with increased immunosuppression


Timeline of common complications:

  • Pre-engraftment (less than 30 days following HCT)

    • Neutropenia:

      • Leukocyte count starts to recover after 1-3 weeks post-HCT (usually later if UCB is used)

      • Administration of GCSF post-HCT reduces the duration of neutropenia and often shortens hospitalization but does not improve overall survival or infection-related mortality.

        • Platelet count usually lags behind by days to weeks.

      • Engraftment syndrome:

        • Occurs during neutrophil recovery after HCT due to release of pro-inflammatory cytokines (TNF, IL-1)

        • Common symptoms: Fever, skin rash, pulmonary infiltrates or edema, diarrhea, and hepatic or renal dysfunction

        • Must be differentiated from aGVHD and infectious complications

        • Steroids are mainstay of treatment

    • Mucositis

    • Infections:

      • HSV, gram- bacteria, gram+ bacteria from GI tract, Candida, Aspergillus

  • Post-engraftment (days 30 to 100)

    • aGVHD tends to occur here

      • Drugs used for GVHD ppx (cyclosporine/tacrolimus) can cause TMA

    • Characteristic infections: CMV, PJP, aspergillus

  • Late phase (>100 days) 

    • cGVHD tends to occur here

    • Characteristic infections: VZV, aspergillus, PJP, other encapsulated bacteria


Graft Failure:

  • Usually due to host immune system rejecting donor marrow 

  • The greater disparity in HLA antigens, the higher chance of rejection

  • Other potential causes:

    • Prior exposure to stem cell poisons

    • Marrow damage during processing/storage

    • Drug toxicity after HCT

    • Viral infections

  • Prognosis of hematologic malignancies that relapse after HCT is extremely poor

  • Post-HCT maintenance therapies:

    • Multiple myeloma: Lenalidomide

    • Hodgkin Lymphoma: Brentuximab Vedotin

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